Website Analysis tools:
Google Analytics
StatCounter
WebTrends
Omniture
OneStat.com
WebSTAT
Site Meter
Awstats
Fireclick
ClickTracks

Keyword Searching tools
Free Keyworddiscovery tool
Digital Point Keyword Research Tool
Google Suggest
Related Pages
Good Keywords
Overture Inventory

Paid Keyword Searching tools:
Wordtracker- free trial also available - Discover the best keywords to
target on your website
Keyword Discovery- free trial also available - Find the best keywords for
your website

Site ranking free tools:
www.alexa.com
www.compete.com
www.ranking.com
www.nielsen-netratings.com/

RSS & Blog Feed Analyzing tools:

Pheedo
MeasureMap
Feedburner
Performancing

Keyword density checker tools:
www.ranks.nl
www.keyworddensity.com
www.seochat.com/seo-tools/keyword-density
http://www.seobench.com/keyword-density-analyzer/
http://www.stargeek.com/keyword_density.php
http://www.virtualpromote.com/tools/keyword-analyzer/
www.golexa.com/

Back link Checker:
http://www.backlinkwatch.com/
http://www.webconfs.com/anchor-text-analysis.php
http://www.prsearch.biz/inbx.php

Link partner searching tools:
Link Partner Finder
Find Link Partners from zebonline

Other Important SEO Tools:
Link Popularity Check - quick and easy to use web tool from Marketleap.
OptiLink Software is a link analysis program that reveals how top ranked pages achieved their search engine rankings.
Zeus Internet Robot - automatic reciprocal link generator and link directory creator from Cyber-robotics.
Arelis Link Builder - reciprocal links solution from Axandra/Voget Selbach Enterprises GmbH